Last updated: 2025-01-02
Checks: 7 0
Knit directory: R_tutorial/
This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.
The command set.seed(20241223)
was run prior to running
the code in the R Markdown file. Setting a seed ensures that any results
that rely on randomness, e.g. subsampling or permutations, are
reproducible.
Great job! Recording the operating system, R version, and package versions is critical for reproducibility.
Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.
Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version f0d8901. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for
the analysis have been committed to Git prior to generating the results
(you can use wflow_publish
or
wflow_git_commit
). workflowr only checks the R Markdown
file, but you know if there are other scripts or data files that it
depends on. Below is the status of the Git repository when the results
were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Unstaged changes:
Modified: analysis/Data_Frames.Rmd
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were
made to the R Markdown (analysis/Getting_Started.Rmd
) and
HTML (docs/Getting_Started.html
) files. If you’ve
configured a remote Git repository (see ?wflow_git_remote
),
click on the hyperlinks in the table below to view the files as they
were in that past version.
File | Version | Author | Date | Message |
---|---|---|---|---|
Rmd | f0d8901 | Ohm-Np | 2025-01-02 | wflow_publish("analysis/Getting_Started.Rmd") |
html | f74fd19 | Ohm-Np | 2024-12-27 | Build site. |
Rmd | 479d007 | Ohm-Np | 2024-12-27 | wflow_publish("analysis/Getting_Started.Rmd") |
html | e2284d2 | Ohm-Np | 2024-12-25 | Build site. |
Rmd | 3551830 | Ohm-Np | 2024-12-25 | wflow_publish("analysis/Getting_Started.Rmd") |
html | 851973f | Ohm-Np | 2024-12-25 | Build site. |
Rmd | 2624968 | Ohm-Np | 2024-12-25 | wflow_publish("analysis/Getting_Started.Rmd") |
html | 2b4152a | Ohm-Np | 2024-12-24 | Build site. |
Rmd | 6e74b14 | Ohm-Np | 2024-12-24 | add chapter getting started |
html | 6e74b14 | Ohm-Np | 2024-12-24 | add chapter getting started |
Before diving into geospatial analysis, it’s important to set up your working environment and familiarize yourself with the essential tools. This chapter will guide you through the process of installing R and RStudio, as well as the key packages required for handling geospatial data. You’ll also learn about the basic structure of geospatial datasets and how to prepare your system for efficient analysis. By the end of this chapter, you’ll have everything in place to start working with vector and raster data in RStudio.
To begin your geospatial journey in R, you’ll need to install two key components: R and RStudio. R is the programming language that powers your analysis, while RStudio is a user-friendly integrated development environment (IDE) that makes working with R easier.
1. Install R:
2. Install RStudio:
Once R and RStudio are installed, the next step is to set up the essential R packages for geospatial analysis. Packages like sf, terra, and dplyr provide the tools needed to handle spatial data, perform geospatial operations, and streamline data manipulation. We also use package ggplot2 for visualization purpose. To install these packages, open RStudio and run the following command in the Console:
# set CRAN mirror
options(repos = c(CRAN = "https://cran.rstudio.com/"))
# packages are only installed when necessary, avoiding repeated output
packages <- c("sf", "terra", "dplyr", "ggplot2", "tidyr")
installed_packages <- rownames(installed.packages())
missing_packages <- packages[!(packages %in% installed_packages)]
if(length(missing_packages)) install.packages(missing_packages, quiet = TRUE)
This command will download and install the packages directly from CRAN. The sf package allows you to work with vector data using the Simple Features standard, while terra is designed for handling raster data. The dplyr package, part of the tidyverse, simplifies data manipulation with its intuitive functions. With these packages installed, you’ll have a solid foundation for geospatial analysis in R.
sessionInfo()
R version 4.4.0 (2024-04-24 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 22631)
Matrix products: default
locale:
[1] LC_COLLATE=English_Germany.utf8 LC_CTYPE=English_Germany.utf8
[3] LC_MONETARY=English_Germany.utf8 LC_NUMERIC=C
[5] LC_TIME=English_Germany.utf8
time zone: Europe/Berlin
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] workflowr_1.7.1
loaded via a namespace (and not attached):
[1] vctrs_0.6.5 httr_1.4.7 cli_3.6.3 knitr_1.48
[5] rlang_1.1.4 xfun_0.47 stringi_1.8.4 processx_3.8.4
[9] promises_1.3.0 jsonlite_1.8.8 glue_1.7.0 rprojroot_2.0.4
[13] git2r_0.33.0 htmltools_0.5.8.1 httpuv_1.6.15 ps_1.8.1
[17] sass_0.4.9 fansi_1.0.6 rmarkdown_2.28 jquerylib_0.1.4
[21] tibble_3.2.1 evaluate_0.24.0 fastmap_1.2.0 yaml_2.3.10
[25] lifecycle_1.0.4 whisker_0.4.1 stringr_1.5.1 compiler_4.4.0
[29] fs_1.6.4 pkgconfig_2.0.3 Rcpp_1.0.13 rstudioapi_0.16.0
[33] later_1.3.2 digest_0.6.36 R6_2.5.1 utf8_1.2.4
[37] pillar_1.9.0 callr_3.7.6 magrittr_2.0.3 bslib_0.8.0
[41] tools_4.4.0 cachem_1.1.0 getPass_0.2-4